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HADOOP-16988. Remove source code from branch-2. (aajisaka via jhung)

This closes #1959

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MAPREDUCE-6875. Rename mapred-site.xml.template to mapred-site.xml. (Yuanbo Liu via Haibo Chen)

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HADOOP-7560. Change src layout to be heirarchical. Contributed by Alejandro Abdelnur.

git-svn-id: 13f79535-47bb-0310-9956-ffa450edef68

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