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Move Pregelix and Hivesterix codebase to new repositories: 1. Move Pregelix codebase to https://github.com/pregelix/pregelix; 2. Move Hivesterix codebase to https://code.google.com/p/hivesterix .

Change-Id: Iede698fcb92a0ad0a7a4918ea69b54886fd64fc7

Reviewed-on: http://fulliautomatix.ics.uci.edu:8443/155

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Ian Maxon <imaxon@uci.edu>

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Support big vertex in Pregelix. --For those vertice beyond page size, we store them on HDFS as immutable files. --Updates on those big vertice will trigger creations of new immutable files.

Change-Id: I6b6f0528b6b5360c96dcdace1fa360d42c517f22

Reviewed-on: http://fulliautomatix.ics.uci.edu:8443/72

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Pouria Pirzadeh <pouria.pirzadeh@gmail.com>

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Several major changes in hyracks: -- reduced CC/NC communications for reporting partition request and availability; partition request/availability are only reported for the case of send-side materialized (without pipelining) policies in case of task re-attempt. -- changed buffer cache to dynamically allocate memory based on needs instead of pre-allocating -- changed each network channel to lazily allocate memory based on needs, and changed materialized connectors to lazily allocate files based on needs -- changed several major CCNCCFunctions to use non-java serde -- added a sort-based group-by operator which pushes group-by aggregations into an external sort -- make external sort a stable sort

1,3,and 4 is to reduce the job overhead.

2 is to reduce the unecessary NC resource consumptions such as memory and files.

5 and 6 are improvements to runtime operators.

One change in algebricks:

-- implemented a rule to push group-by aggregation into sort, i.e., using the sort-based gby operator

Several important changes in pregelix:

-- remove static states in vertex

-- direct check halt bit without deserialization

-- optimize the sort algorithm by packing yet-another 2-byte normalized key into the tPointers array

Change-Id: Id696f9a9f1647b4a025b8b33d20b3a89127c60d6

Reviewed-on: http://fulliautomatix.ics.uci.edu:8443/35

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Till Westmann <westmann@gmail.com>

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    ./java/edu/uci/ics/pregelix/example/GraphSampleVertex.java
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fix client dyn-opt setting

1. make startcc/nc scripts flexible for different physical memory size; 2. add dynamic optimization option in the Client

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add new example for Counters usage

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support multiple user-defined global aggregators

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turn the default configuration to be variable-sized vertex

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fix the shortestpaths input format

improve the performance of the reachability vertex and the shortest paths vertex

address Vinayak's code review comments

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avoid input stream abstraction for vlong's comparator

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    ./java/edu/uci/ics/pregelix/example/utils/SerDeUtils.java
make failure-recovery work in multi-JVM test

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fix fault-tolerance and error reporting to handle disk failures

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add job concatenation support

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cleanup client error message propagation

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    ./java/edu/uci/ics/pregelix/example/FailureVertex.java
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merge from zheilbron/hyracks_msr

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inherit Hadoop's VLongWritable format

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fix the pregelix example driver to deal with multiple input paths

addd partition early termination support

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    ./java/edu/uci/ics/pregelix/example/EarlyTerminationVertex.java
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complete sizeestimation test

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address Vinayak's comments on open/close of vertex

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code cleanup

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    ./java/edu/uci/ics/pregelix/example/io/BooleanWritable.java
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    ./java/edu/uci/ics/pregelix/example/io/ByteWritable.java
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    ./java/edu/uci/ics/pregelix/example/io/BytesWritable.java
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making test cases smaller

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add message overflow support

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    ./java/edu/uci/ics/pregelix/example/MessageOverflowVertex.java
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    ./java/edu/uci/ics/pregelix/example/lib/io/BooleanWritable.java
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add/update license headers

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add normalized key computer support in Pregelix

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polish pregelix tests

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reintegrate fullstack_dynamic_deployment

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cross merge fullstack_release_candidate into trunk

git-svn-id: https://hyracks.googlecode.com/svn/trunk/fullstack@3208 123451ca-8445-de46-9d55-352943316053

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