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Change folder structure for Java repackage

Change only the folders, not the files, for our package name change.

This will break the build, and needs to be followed by a change to

the package name in all of the source files. However performing

the folder move and file change in two steps lets Git understand

that the files are the same, and lets us track revisions across

those files.

Change-Id: I08aff75e25ac7c6298c32cf3402febbc4a318c2a

Reviewed-on: https://asterix-gerrit.ics.uci.edu/307

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Chris Hillery <ceej@lambda.nu>

    • -131
    • +0
    ./hyracks/storage/am/common/api/IIndex.java
    • -101
    • +0
    ./hyracks/storage/am/common/api/IIndexAccessor.java
    • -34
    • +0
    ./hyracks/storage/am/common/api/IIndexCursor.java
  1. … 3879 more files in changeset.
Introducing data replication API to LSM indexes

Change-Id: I80565fc9d74e30440d2df5917911904ba8f33c25

Reviewed-on: https://asterix-gerrit.ics.uci.edu/322

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: abdullah alamoudi <bamousaa@gmail.com>

  1. … 36 more files in changeset.
Add Apache RAT License Auditor plugin, and fix missing licenses

Change-Id: I39d92ec6654c73b4e6b8ba76dd66770bb60c7b79

Reviewed-on: https://asterix-gerrit.ics.uci.edu/260

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Chris Hillery <ceej@lambda.nu>

Reviewed-by: Till Westmann <tillw@apache.org>

  1. … 32 more files in changeset.
VariableSizeFrame(VSizeFrame) support for Hyracks.

This patch replaced Frame/Accessor/Appender with the new API which

supports BigObject.

The ExternalSorter/TopKSorter/ExternalGroupSorter

have been implemented to support big object.

The Groupby && Join should work with BigObject also. But it will break the

memory budget when it encounter a big object. I will fix the memory

problem later in a separate CR.

The design about the frame allocation is

here:https://docs.google.com/presentation/d/15h9iQf5OYsgGZoQTbGHkj1yS2G9q2fd0s1lDAD1EJq0/edit?usp=sharing

Suggest review order:

Patch 12: It includes all of the sorting operators.

Patch 13: It applys the new IFrame API to all Hyracks codes.

Patch 14: Some bug fixes to pass all Asterix's tests.

Patch 15: Skip it!

Patch 16: Some bug fixes to the Asterix's tests in small frame setting.

Later Patch: address the comments

Change-Id: I2e08692078683f6f2cf17387e39037ad851fc05b

Reviewed-on: https://asterix-gerrit.ics.uci.edu/234

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Yingyi Bu <buyingyi@gmail.com>

  1. … 215 more files in changeset.
Algebricks fix for issue 873.

Change-Id: I78a4a30638d6cc5681b5410046fff6345b515291

Reviewed-on: https://asterix-gerrit.ics.uci.edu/266

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Wenhai Li <lwhaymail@yahoo.com>

Reviewed-by: Ildar Absalyamov <ildar.absalyamov@gmail.com>

  1. … 4 more files in changeset.
Add a flag for LSM-based indices to indicate whether force pages to disk devices during flush and merge.

Change-Id: I988716c03cffe30b008e144d3a478ee25e367212

Reviewed-on: https://asterix-gerrit.ics.uci.edu/240

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Young-Seok Kim <kisskys@gmail.com>

  1. … 79 more files in changeset.
- Fixed Type Casting issue - Reorganized duplicated internal class in the DelimitedDataParser and DelimitedDataParserFactory - Prevented a user from creating an inverted index on a dataset with a variable-length PK

Change-Id: Ic5606501223b8d860b49a258ff49afacd7d76b9a

Reviewed-on: http://fulliautomatix.ics.uci.edu:8443/191

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Till Westmann <westmann@gmail.com>

    • -3
    • +4
    ./hyracks/storage/am/common/api/ISlotManager.java
  1. … 63 more files in changeset.
Fix for issue 771 - removed FieldLengthIgnoring comparators and added field length check in Pointable comparator

Change-Id: Icac725fb54db21f1aa37ae0db545fbdebb651b14

Reviewed-on: http://fulliautomatix.ics.uci.edu:8443/200

Reviewed-by: Young-Seok Kim <kisskys@gmail.com>

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

  1. … 9 more files in changeset.
- Added Tokenize Operator in addition to the bulkload operator changes that were made by Zachary Heilbron. The tokenize operator is only added to the logical plan when bulk-loading the data. - Each secondary index is now updated in the separate branch by using the replicate operator. - Sink Operator now accepts multiple inputs. - Fixed the bulk-load so that it correctly produces auto-generated PK.

Change-Id: Ifb591754dba5eb4a9207edaa4e658f4cc745893a

Reviewed-on: http://fulliautomatix.ics.uci.edu:8443/78

Reviewed-by: Young-Seok Kim <kisskys@gmail.com>

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

  1. … 51 more files in changeset.
Added LSM component-level filters for all indexes.

Change-Id: I898cf885c9f88feae85c99799a00fd8ec036efea

Reviewed-on: http://fulliautomatix.ics.uci.edu:8443/81

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Yingyi Bu <buyingyi@gmail.com>

    • -0
    • +44
    ./hyracks/storage/am/common/impls/AbstractSearchPredicate.java
  1. … 127 more files in changeset.
Adding external indexes

In Hyracks side, this change include the following:

1. The addition of three indexes:

a) external b-tree index

b) external r-tree index

c) external b-tree with buddy b-tree index

2. creating an additional logical operator in algebricks for performing lookup operations over external data and modify the different visitors to work with this operator

3. Added copyright header to all new files

Change-Id: Iecfbd86f06aff3caaf3a9652b63420666745ebb9

Reviewed-on: http://fulliautomatix.ics.uci.edu:8443/69

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Zachary Heilbron <zheilbron@gmail.com>

Reviewed-by: Sattam Alsubaiee <salsubaiee@gmail.com>

Reviewed-by: Ian Maxon <imaxon@uci.edu>

    • -0
    • +39
    ./hyracks/storage/am/common/api/ITwoPCIndexBulkLoader.java
  1. … 60 more files in changeset.
fixed issue 731, 740, and more

commit 8911cc529e72e2bb544d9b472d6e10f173d173af

Author: Young-Seok <kisskys@gmail.com>

Date: Sun May 18 11:28:28 2014 -0700

another fix for picking available index for leftouterjoin plan

commit 9bce43087615fee53613467a027833dd53e190f9

Merge: c8e85ac efab69f

Author: Young-Seok <kisskys@gmail.com>

Date: Sun May 11 22:22:10 2014 -0700

merged master to kisskys/left-outer-join-issue branch

commit c8e85aca31545c13b2a02ff6dc259943e2cf66ad

Author: Young-Seok <kisskys@gmail.com>

Date: Sun May 11 20:17:17 2014 -0700

changes for left-outer-join to pick available indexes

Change-Id: Ib0fc186bc9388802f95445edee92c428b3bb69cc

Reviewed-on: http://fulliautomatix.ics.uci.edu:8443/34

Reviewed-by: Inci Cetindil <icetindil@gmail.com>

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

  1. … 47 more files in changeset.
LSM Rtree Optimization

  1. … 55 more files in changeset.
added ability to trigger an application state dump through the rest api

  1. … 21 more files in changeset.
Merge branch 'master' into zheilbron/hyracks_msr_demo

  1. … 2 more files in changeset.
fix IIndexAccessor interface, add a boolean exclusiveMode parameter for the createSearchCursor method

  1. … 42 more files in changeset.
Pages are decided to be dirty when the write latches are released. Optimized the scan and update cursor.

  1. … 20 more files in changeset.
Merge branch 'master' into zheilbron/hyracks_msr_demo

Merge remote-tracking branch 'origin/raman/master_feeds' into zheilbron/hyracks_msr_demo

Conflicts:

hyracks/hyracks-control/hyracks-control-cc/src/main/java/edu/uci/ics/hyracks/control/cc/job/JobRun.java

hyracks/hyracks-storage-am-common/src/main/java/edu/uci/ics/hyracks/storage/am/common/impls/AbstractTreeIndex.java

  1. … 3 more files in changeset.
Fix for asterix issue 630.

  1. … 15 more files in changeset.
use raw binary comparator internally for pregelix

  1. … 7 more files in changeset.
Support for full compation.

  1. … 18 more files in changeset.
fix fault-tolerance and error reporting to handle disk failures

  1. … 31 more files in changeset.
Merge branch 'master' into dev/hyracks_msr

Conflicts:

hyracks/hyracks-control/hyracks-control-cc/src/main/java/edu/uci/ics/hyracks/control/cc/job/JobRun.java

hyracks/hyracks-dataflow-std/src/main/java/edu/uci/ics/hyracks/dataflow/std/sort/FrameSorter.java

hyracks/hyracks-storage-am-common/src/main/java/edu/uci/ics/hyracks/storage/am/common/impls/AbstractTreeIndex.java

pregelix/pregelix-api/src/main/java/edu/uci/ics/pregelix/api/graph/Vertex.java

pregelix/pregelix-example/src/main/java/edu/uci/ics/pregelix/example/io/VLongWritable.java

pregelix/pregelix-example/src/test/java/edu/uci/ics/pregelix/example/lib/io/SizeEstimationTest.java

pregelix/pregelix-runtime/src/main/java/edu/uci/ics/pregelix/runtime/function/ComputeUpdateFunctionFactory.java

pregelix/pregelix-runtime/src/main/java/edu/uci/ics/pregelix/runtime/simpleagg/AccumulatingAggregatorFactory.java

  1. … 4 more files in changeset.
Revert a change that was done during debugging.

Code refactoring and cleanup.

  1. … 23 more files in changeset.
Bug fixes.

  1. … 10 more files in changeset.
Added many fixes. Checkpointing.

  1. … 25 more files in changeset.
merge from zheilbron/hyracks_msr

  1. … 291 more files in changeset.
Potential fix for issue 123.