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Change folder structure for Java repackage

Change only the folders, not the files, for our package name change.

This will break the build, and needs to be followed by a change to

the package name in all of the source files. However performing

the folder move and file change in two steps lets Git understand

that the files are the same, and lets us track revisions across

those files.

Change-Id: I08aff75e25ac7c6298c32cf3402febbc4a318c2a

Reviewed-on: https://asterix-gerrit.ics.uci.edu/307

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Chris Hillery <ceej@lambda.nu>

    • -96
    • +0
    ./application/NCApplicationContext.java
    • -241
    • +0
    ./dataset/DatasetMemoryManager.java
    • -268
    • +0
    ./dataset/DatasetPartitionManager.java
    • -97
    • +0
    ./dataset/DatasetPartitionReader.java
    • -139
    • +0
    ./dataset/DatasetPartitionWriter.java
  1. … 3879 more files in changeset.
Add Apache RAT License Auditor plugin, and fix missing licenses

Change-Id: I39d92ec6654c73b4e6b8ba76dd66770bb60c7b79

Reviewed-on: https://asterix-gerrit.ics.uci.edu/260

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Chris Hillery <ceej@lambda.nu>

Reviewed-by: Till Westmann <tillw@apache.org>

    • -0
    • +14
    ./resources/memory/MemoryManager.java
  1. … 31 more files in changeset.
VariableSizeFrame(VSizeFrame) support for Hyracks.

This patch replaced Frame/Accessor/Appender with the new API which

supports BigObject.

The ExternalSorter/TopKSorter/ExternalGroupSorter

have been implemented to support big object.

The Groupby && Join should work with BigObject also. But it will break the

memory budget when it encounter a big object. I will fix the memory

problem later in a separate CR.

The design about the frame allocation is

here:https://docs.google.com/presentation/d/15h9iQf5OYsgGZoQTbGHkj1yS2G9q2fd0s1lDAD1EJq0/edit?usp=sharing

Suggest review order:

Patch 12: It includes all of the sorting operators.

Patch 13: It applys the new IFrame API to all Hyracks codes.

Patch 14: Some bug fixes to pass all Asterix's tests.

Patch 15: Skip it!

Patch 16: Some bug fixes to the Asterix's tests in small frame setting.

Later Patch: address the comments

Change-Id: I2e08692078683f6f2cf17387e39037ad851fc05b

Reviewed-on: https://asterix-gerrit.ics.uci.edu/234

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Yingyi Bu <buyingyi@gmail.com>

    • -0
    • +3
    ./partitions/MaterializedPartitionInputChannel.java
    • -4
    • +3
    ./profiling/ConnectorReceiverProfilingFrameReader.java
    • -0
    • +85
    ./resources/memory/FrameManager.java
  1. … 211 more files in changeset.
Allow retries on IPCSystem.getHandle().

NC will retry indefinitely to connect CC.

Change-Id: I0f4c15cacd265c3fbe85307af9f5c33577035447

Reviewed-on: https://asterix-gerrit.ics.uci.edu/250

Reviewed-by: Chris Hillery <ceej@lambda.nu>

Tested-by: Chris Hillery <ceej@lambda.nu>

  1. … 4 more files in changeset.
Adding hash join logging comments.

commit 513c3a7899dc64af3c3cdec96fad9093a4ca2c5f

Merge: b27e9b5 82609d9

Author: Eldon Carman <ecarm002@ucr.edu>

Date: Thu Feb 5 12:47:52 2015 -0800

Adding hash join logging comments.

Change-Id: Iade2c53436e5ae82c31305d6f618c780cd72568b

Reviewed-on: http://fulliautomatix.ics.uci.edu:8443/219

Reviewed-by: Ian Maxon <imaxon@uci.edu>

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Pouria Pirzadeh <pouria.pirzadeh@gmail.com>

    • -1
    • +1
    ./dataset/DatasetPartitionManager.java
  1. … 6 more files in changeset.
Add ability to configure network ports for NCs and CC.

This includes the ability to specify different "public" ports, for situations

when a node is behind a NAT firewall.

Also eliminate IP check for data and dataset network addresses, which

should allow DNS names to be used as well.

Some internal cleanup regarding handling network addresses.

Change-Id: I9947fe3cec59daef3458cdc14d33c9353449da27

Reviewed-on: http://fulliautomatix.ics.uci.edu:8443/204

Reviewed-by: Ian Maxon <imaxon@uci.edu>

Tested-by: Ian Maxon <imaxon@uci.edu>

    • -1
    • +2
    ./dataset/DatasetPartitionManager.java
    • -2
    • +2
    ./work/ReportPartitionAvailabilityWork.java
  1. … 21 more files in changeset.
Add Shutdown via API to Hyracks

This change adds a method to HyracksConnection called stopCluster().

When the CC recieves a message from this, it asks all NC tasks to close

and acknowledge that they have recieved the message and are closing.

If all NCs have closed, or a 10 second timeout elapses, the CC then

exits with a 0 return code if all NCs closed, or a 1 if some did

not acknowledge the shutdown request.

Change-Id: Iaf3d395dc7964e114d4929830f40063f58e0d5da

Reviewed-on: http://fulliautomatix.ics.uci.edu:8443/76

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Vinayak Borkar <vinayakb@gmail.com>

    • -0
    • +63
    ./work/ShutdownWork.java
  1. … 22 more files in changeset.
Several major changes in hyracks: -- reduced CC/NC communications for reporting partition request and availability; partition request/availability are only reported for the case of send-side materialized (without pipelining) policies in case of task re-attempt. -- changed buffer cache to dynamically allocate memory based on needs instead of pre-allocating -- changed each network channel to lazily allocate memory based on needs, and changed materialized connectors to lazily allocate files based on needs -- changed several major CCNCCFunctions to use non-java serde -- added a sort-based group-by operator which pushes group-by aggregations into an external sort -- make external sort a stable sort

1,3,and 4 is to reduce the job overhead.

2 is to reduce the unecessary NC resource consumptions such as memory and files.

5 and 6 are improvements to runtime operators.

One change in algebricks:

-- implemented a rule to push group-by aggregation into sort, i.e., using the sort-based gby operator

Several important changes in pregelix:

-- remove static states in vertex

-- direct check halt bit without deserialization

-- optimize the sort algorithm by packing yet-another 2-byte normalized key into the tPointers array

Change-Id: Id696f9a9f1647b4a025b8b33d20b3a89127c60d6

Reviewed-on: http://fulliautomatix.ics.uci.edu:8443/35

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Till Westmann <westmann@gmail.com>

    • -13
    • +14
    ./io/profiling/IOCounterLinux.java
    • -1
    • +8
    ./partitions/MaterializedPartition.java
    • -6
    • +11
    ./partitions/MaterializedPartitionWriter.java
    • -39
    • +53
    ./partitions/MaterializingPipelinedPartition.java
    • -29
    • +62
    ./partitions/PartitionManager.java
  1. … 265 more files in changeset.
reduced communication during result distribution - when reporting the location of results, the NCs also report if the result partition is empty - the client does not try to read empty partitions better toString() for subclasses of AbstractWork

Change-Id: Ia39f657e689ea305d49d55bd27c9a512e1ff970f

Reviewed-on: http://fulliautomatix.ics.uci.edu:8443/39

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Yingyi Bu <buyingyi@gmail.com>

    • -24
    • +35
    ./dataset/DatasetPartitionManager.java
    • -4
    • +33
    ./dataset/DatasetPartitionWriter.java
  1. … 22 more files in changeset.
remove extra method

merge master to fix-mem branch

Merge branch 'master' into pouria/fix-memory

Conflicts:

hyracks/hyracks-api/src/main/java/edu/uci/ics/hyracks/api/context/IHyracksCommonContext.java

hyracks/hyracks-client/src/main/java/edu/uci/ics/hyracks/client/dataset/DatasetClientContext.java

hyracks/hyracks-storage-am-lsm-invertedindex/src/main/java/edu/uci/ics/hyracks/storage/am/lsm/invertedindex/ondisk/OnDiskInvertedIndex.java

hyracks/hyracks-test-support/src/main/java/edu/uci/ics/hyracks/test/support/TestTaskContext.java

  1. … 3 more files in changeset.
Merge branch 'master' into zheilbron/hyracks_msr_demo

Conflicts:

hyracks/hyracks-control/hyracks-control-nc/src/main/java/edu/uci/ics/hyracks/control/nc/NodeControllerService.java

Merge branch 'master' into zheilbron/hyracks_msr_demo

Conflicts:

hyracks/hyracks-api/src/main/java/edu/uci/ics/hyracks/api/lifecycle/LifeCycleComponentManager.java

  1. … 1 more file in changeset.
fix linux io counter to return relative I/Os

  1. … 1 more file in changeset.
fix the linux io counter

add IO counters in the client library

  1. … 3 more files in changeset.
fix for the case iostat is not installed

add I/O counter

    • -0
    • +29
    ./io/profiling/IIOCounter.java
    • -0
    • +30
    ./io/profiling/IOCounterDefault.java
    • -0
    • +35
    ./io/profiling/IOCounterFactory.java
    • -0
    • +76
    ./io/profiling/IOCounterLinux.java
    • -0
    • +30
    ./io/profiling/IOCounterOSX.java
  1. … 2 more files in changeset.
added ability to trigger an application state dump through the rest api

    • -0
    • +19
    ./application/NCApplicationContext.java
    • -0
    • +25
    ./work/StateDumpWork.java
  1. … 19 more files in changeset.
fix application lifecyle mgmt in hyracks nc

  1. … 6 more files in changeset.
NodeControllers clean up appEntryPoints on shutdown (2nd try)

  1. … 1 more file in changeset.
revert a minor change

revert a minor change

fix IIndexAccessor interface, add a boolean exclusiveMode parameter for the createSearchCursor method

  1. … 43 more files in changeset.
fix file write race condition

  1. … 23 more files in changeset.
Disabled memory limit for MSR

Changed commented code to reflect master.

Merge branch 'master' into pouria/fix-memory

  1. … 1 more file in changeset.
merged master back

  1. … 2 more files in changeset.