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Change folder structure for Java repackage

Change only the folders, not the files, for our package name change.

This will break the build, and needs to be followed by a change to

the package name in all of the source files. However performing

the folder move and file change in two steps lets Git understand

that the files are the same, and lets us track revisions across

those files.

Change-Id: I08aff75e25ac7c6298c32cf3402febbc4a318c2a

Reviewed-on: https://asterix-gerrit.ics.uci.edu/307

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Chris Hillery <ceej@lambda.nu>

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    ./GetActivityClusterGraphJSONWork.java
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    ./GetDatasetDirectoryServiceInfoWork.java
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Add Apache RAT License Auditor plugin, and fix missing licenses

Change-Id: I39d92ec6654c73b4e6b8ba76dd66770bb60c7b79

Reviewed-on: https://asterix-gerrit.ics.uci.edu/260

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Chris Hillery <ceej@lambda.nu>

Reviewed-by: Till Westmann <tillw@apache.org>

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Add ability to configure network ports for NCs and CC.

This includes the ability to specify different "public" ports, for situations

when a node is behind a NAT firewall.

Also eliminate IP check for data and dataset network addresses, which

should allow DNS names to be used as well.

Some internal cleanup regarding handling network addresses.

Change-Id: I9947fe3cec59daef3458cdc14d33c9353449da27

Reviewed-on: http://fulliautomatix.ics.uci.edu:8443/204

Reviewed-by: Ian Maxon <imaxon@uci.edu>

Tested-by: Ian Maxon <imaxon@uci.edu>

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Add Shutdown via API to Hyracks

This change adds a method to HyracksConnection called stopCluster().

When the CC recieves a message from this, it asks all NC tasks to close

and acknowledge that they have recieved the message and are closing.

If all NCs have closed, or a 10 second timeout elapses, the CC then

exits with a 0 return code if all NCs closed, or a 1 if some did

not acknowledge the shutdown request.

Change-Id: Iaf3d395dc7964e114d4929830f40063f58e0d5da

Reviewed-on: http://fulliautomatix.ics.uci.edu:8443/76

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Vinayak Borkar <vinayakb@gmail.com>

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    ./ClusterShutdownWork.java
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    ./NotifyShutdownWork.java
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Several major changes in hyracks: -- reduced CC/NC communications for reporting partition request and availability; partition request/availability are only reported for the case of send-side materialized (without pipelining) policies in case of task re-attempt. -- changed buffer cache to dynamically allocate memory based on needs instead of pre-allocating -- changed each network channel to lazily allocate memory based on needs, and changed materialized connectors to lazily allocate files based on needs -- changed several major CCNCCFunctions to use non-java serde -- added a sort-based group-by operator which pushes group-by aggregations into an external sort -- make external sort a stable sort

1,3,and 4 is to reduce the job overhead.

2 is to reduce the unecessary NC resource consumptions such as memory and files.

5 and 6 are improvements to runtime operators.

One change in algebricks:

-- implemented a rule to push group-by aggregation into sort, i.e., using the sort-based gby operator

Several important changes in pregelix:

-- remove static states in vertex

-- direct check halt bit without deserialization

-- optimize the sort algorithm by packing yet-another 2-byte normalized key into the tPointers array

Change-Id: Id696f9a9f1647b4a025b8b33d20b3a89127c60d6

Reviewed-on: http://fulliautomatix.ics.uci.edu:8443/35

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Till Westmann <westmann@gmail.com>

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    ./JobletCleanupNotificationWork.java
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reduced communication during result distribution - when reporting the location of results, the NCs also report if the result partition is empty - the client does not try to read empty partitions better toString() for subclasses of AbstractWork

Change-Id: Ia39f657e689ea305d49d55bd27c9a512e1ff970f

Reviewed-on: http://fulliautomatix.ics.uci.edu:8443/39

Tested-by: Jenkins <jenkins@fulliautomatix.ics.uci.edu>

Reviewed-by: Yingyi Bu <buyingyi@gmail.com>

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    ./GetResultPartitionLocationsWork.java
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    ./RegisterPartitionAvailibilityWork.java
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    ./RegisterResultPartitionLocationWork.java
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    ./ReportResultPartitionWriteCompletionWork.java
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formatting

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removed unnecessary fields in JobInfo

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added ability to trigger an application state dump through the rest api

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    ./GatherStateDumpsWork.java
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    ./NotifyStateDumpResponse.java
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address Vinayak's code review comments

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    ./AbstractHeartbeatWork.java
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notifyHeartbeat in some non-heartbeat events

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    ./utils/HeartbeatUtils.java
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1. fix the node failure scenario in job scheduler; 2. add fault-tolerance support and tests in pregelix

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cleanup client error message propagation

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checkpoint

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Merge branch 'master' of https://code.google.com/p/hyracks

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    ./GetResultPartitionLocationsWork.java
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add/update license headers

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    ./GetActivityClusterGraphJSONWork.java
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    ./GetDatasetDirectoryServiceInfoWork.java
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    ./GetResultPartitionLocationsWork.java
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Move the interfaces which are not required by client in hyracks api to hyracks-control-nc project.

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    ./GetResultPartitionLocationsWork.java
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Merge master to madhusudancs/error-reporting.

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fix possible null pointer in waitforjobcompletition work

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added job info

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    ./GetJobInfoWork.java
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Added mechanism for an application to subscribe to cluster membership events

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Changed error reporting to return exceptions that were responsible for Job termination

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reintegrate fullstack_dynamic_deployment

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    ./CliDeployBinaryWork.java
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    ./CliUnDeployBinaryWork.java
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    ./NotifyDeployBinaryWork.java
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Propagate the actual exceptions thrown in the NCs to the CC and to the client via the API or WebUI.

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Merged fullstack_lsm_staging upto r3336

git-svn-id: https://hyracks.googlecode.com/svn/trunk/fullstack@3339 123451ca-8445-de46-9d55-352943316053

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cross merge fullstack_release_candidate into trunk

git-svn-id: https://hyracks.googlecode.com/svn/trunk/fullstack@3208 123451ca-8445-de46-9d55-352943316053

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    ./GetDatasetDirectoryServiceInfoWork.java
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    ./GetResultPartitionLocationsWork.java
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    ./RegisterResultPartitionLocationWork.java
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    ./ReportResultPartitionFailureWork.java
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    ./ReportResultPartitionWriteCompletionWork.java
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Merge fullstack_asterix_stabilization with fullstack_hyracks_result_distribution.

git-svn-id: https://hyracks.googlecode.com/svn/branches/fullstack_hyracks_result_distribution@3170 123451ca-8445-de46-9d55-352943316053

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Merged fullstack_asterix_stabilization -r 2933:3157

git-svn-id: https://hyracks.googlecode.com/svn/branches/fullstack_hyracks_ioc@3164 123451ca-8445-de46-9d55-352943316053

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    ./GetDatasetDirectoryServiceInfoWork.java
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    ./GetResultPartitionLocationsWork.java
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    ./RegisterResultPartitionLocationWork.java
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    ./ReportResultPartitionFailureWork.java
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    ./ReportResultPartitionWriteCompletionWork.java
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Add support to handle job failures.

git-svn-id: https://hyracks.googlecode.com/svn/branches/fullstack_hyracks_result_distribution@3159 123451ca-8445-de46-9d55-352943316053

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Reverting the merge of fullstack_hyracks_result_distribution branch until all the tests pass.

git-svn-id: https://hyracks.googlecode.com/svn/branches/fullstack_asterix_stabilization@3033 123451ca-8445-de46-9d55-352943316053

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    ./GetDatasetDirectoryServiceInfoWork.java
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    ./GetResultPartitionLocationsWork.java
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    ./RegisterResultPartitionLocationWork.java
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    ./ReportResultPartitionFailureWork.java
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    ./ReportResultPartitionWriteCompletionWork.java
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